Genes involved in mRNA surveillance are induced in Brachypodium distachyon under cadmium toxicity

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dc.contributor.authorAksoy, Emre
dc.contributor.authorUncu, Ali Tevfik
dc.contributor.authorFiliz, Ertugrul
dc.contributor.authorOrman, Sule
dc.contributor.authorCetin, Durmus
dc.contributor.authorAkbudak, M. Aydin
dc.date.accessioned2024-02-23T13:59:23Z
dc.date.available2024-02-23T13:59:23Z
dc.date.issued2022
dc.departmentNEÜen_US
dc.description.abstractBackground Cd accumulation in plant cells results in dramatic problems including oxidative stress and inhibition of vital enzymes. It also affects mineral uptakes by disrupting membrane permeability. Interaction among Cd and other plant nutrient elements changes the nutritional contents of crops and reduces their yield. Methods and results In the present study, Cd stress in Brachypodium distachyon led to the upregulation of some heavy metal transport genes (influx or efflux) encoding cation-efflux proteins, heavy metal-associated proteins and NRAMP proteins. The Arabidopsis orthologs of the differentially expressed B. distachyon genes (DEGs) under Cd toxicity were identified, which exhibited Bradi4g26905 was an ortholog of AtALY1-2. Detailed co-expression network and gene ontology analyses found the potential involvement of the mRNA surveillance pathway in Cd tolerance in B. distachyon. These genes were shown to be downregulated by sulfur (S) deficiency. Conclusions This is the first transcriptomic study investigating the effect of Cd toxicity in B. distachyon, a model plant for genomic studies in Poaceae (Gramineae) species. The results are expected to provide valuable information for more comprehensive research related to heavy metal toxicity in plants.en_US
dc.description.sponsorshipAkdeniz University Scientific Research Projects Coordination Unit [FBA-2018-3532]en_US
dc.description.sponsorshipThe study was funded by Akdeniz University Scientific Research Projects Coordination Unit. Grant number: FBA-2018-3532.en_US
dc.identifier.doi10.1007/s11033-021-06952-3
dc.identifier.endpage5313en_US
dc.identifier.issn0301-4851
dc.identifier.issn1573-4978
dc.identifier.issue6en_US
dc.identifier.pmid34812999en_US
dc.identifier.scopus2-s2.0-85119851670en_US
dc.identifier.scopusqualityQ2en_US
dc.identifier.startpage5303en_US
dc.identifier.urihttps://doi.org/10.1007/s11033-021-06952-3
dc.identifier.urihttps://hdl.handle.net/20.500.12452/11160
dc.identifier.volume49en_US
dc.identifier.wosWOS:000721666100001en_US
dc.identifier.wosqualityQ4en_US
dc.indekslendigikaynakWeb of Scienceen_US
dc.indekslendigikaynakScopusen_US
dc.indekslendigikaynakPubMeden_US
dc.language.isoenen_US
dc.publisherSpringeren_US
dc.relation.ispartofMolecular Biology Reportsen_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/closedAccessen_US
dc.subjectBrachypodium Distachyonen_US
dc.subjectCadmium Toxicityen_US
dc.subjectMrna Surveillanceen_US
dc.subjectHeavy Metal Stressen_US
dc.subjectRnaseqen_US
dc.titleGenes involved in mRNA surveillance are induced in Brachypodium distachyon under cadmium toxicityen_US
dc.typeArticleen_US

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