iPBS-Retrotransposon Markers in the Analysis of Genetic Diversity among Common Bean (Phaseolus vulgaris L.) Germplasm from Turkiye

Basit Öğe Kaydı
dc.contributor.authorHaliloglu, Kamil
dc.contributor.authorTurkoglu, Aras
dc.contributor.authorOzturk, Halil Ibrahim
dc.contributor.authorOzkan, Guller
dc.contributor.authorElkoca, Erdal
dc.contributor.authorPoczai, Peter
dc.date.accessioned2024-02-23T14:35:09Z
dc.date.available2024-02-23T14:35:09Z
dc.date.issued2022
dc.departmentNEÜen_US
dc.description.abstractBeans are legumes that play extremely important roles in human nutrition, serving as good sources of protein, vitamins, minerals, and antioxidants. In this study, we tried to elucidate the genetic diversity and population structure of 40 Turkish bean (Phaseolus vulgaris L.) local varieties and 5 commercial cultivars collected from 8 different locations in Erzurum-Ispir by using inter-primary binding site (iPBS) retrotransposon markers. For molecular characterization, the 26 most polymorphic iPBS primers were used; 52 bands per primer and 1350 bands in total were recorded. The mean polymorphism information content was 0.331. Various diversity indices, such as the mean effective allele number (0.706), mean Shannon's information index (0.546), and gene diversity (0.361) revealed the presence of sufficient genetic diversity in the germplasm examined. Molecular analysis of variance (AMOVA) revealed that 67% of variation in bean germplasm was due to differences within populations. In addition, population structure analysis exposed all local and commercial bean varieties from five sub-populations. Expected heterozygosity values ranged between 0.1567 (the fourth sub-population) and 0.3210 (first sub-population), with an average value of 0.2103. In contrary, population differentiation measurement (Fst) was identified as 0.0062 for the first sub-population, 0.6372 for the fourth subpopulations. This is the first study to investigate the genetic diversity and population structure of bean germplasm in Erzurum-Ispir region using the iPBS-retrotransposon marker system. Overall, the current results showed that iPBS markers could be used consistently to elucidate the genetic diversity of local and commercial bean varieties and potentially be included in future studies examining diversity in a larger collection of local and commercial bean varieties from different regions.en_US
dc.description.sponsorshipHelsinki University Library; iASK Research Granten_US
dc.description.sponsorshipPP expresses his gratitude for the support of the iASK Research Grant. The authors thank the Helsinki University Library for supporting open-access publication.en_US
dc.identifier.doi10.3390/genes13071147
dc.identifier.issn2073-4425
dc.identifier.issue7en_US
dc.identifier.pmid35885928en_US
dc.identifier.scopus2-s2.0-85133276012en_US
dc.identifier.urihttps://doi.org/10.3390/genes13071147
dc.identifier.urihttps://hdl.handle.net/20.500.12452/15907
dc.identifier.volume13en_US
dc.identifier.wosWOS:000831591400001en_US
dc.identifier.wosqualityQ2en_US
dc.indekslendigikaynakWeb of Scienceen_US
dc.indekslendigikaynakScopusen_US
dc.indekslendigikaynakPubMeden_US
dc.language.isoenen_US
dc.publisherMdpien_US
dc.relation.ispartofGenesen_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/openAccessen_US
dc.subjectBeanen_US
dc.subjectBreedingen_US
dc.subjectGenetic Diversityen_US
dc.subjectPopulation Structureen_US
dc.titleiPBS-Retrotransposon Markers in the Analysis of Genetic Diversity among Common Bean (Phaseolus vulgaris L.) Germplasm from Turkiyeen_US
dc.typeArticleen_US

Dosyalar

Koleksiyon

WoS İndeksli Yayınlar Koleksiyonu
PubMed İndeksli Yayın Koleksiyonu
Scopus İndeksli Yayınlar Koleksiyonu